Why not swap the intake? Is there an issue with debris from an engine failure?
If the fuel rail won't bolt up, don't modify it to make it work. It really needs to be mounted properly. If these injectors come loose or an o-ring leaks, it could really cause problems.
Besides, the return system and returnless system operate at different pressures. The injectors, PCM programming, and fuel pump are all different and will need to match each other.